View results of completed coexpression analysis

JOB ID = GIANT_HEIGHT_LangoAllen2010_publicrelease_HapMapCeuFreq_db138thresh5e-06_complete_BACKCIRC_pj0.1_f5ep

Of 8882 SNPs in input data, 358 were found in FANTOM5 TSS regions (300-TSS-100bp). The input set contained 7.57 SNPs per million bases in TSS regions, compared with 2.81 SNPs per million bases genome-wide. 471 TSS regions were hit, in 166 distinct regions. Results are shown below for coexpression within the input set compared with 100 pre-mapping (genome-wide) permutations. Download full results file here.

Please cite: Baillie JK et al. Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. https://doi.org/10.1101/095349.

	Significantly coexpressed regulatory regions
	Other regulatory regions containing a variant

Circular (Circos) plot of co-expression links between different locations on the genome. The coloured track shows an end-to-end concatenated view of the human chromosomes. Links depict an association between two SNP clusters and are coloured according to -log10(p)(line colour indicates -log10(p): red>3, blue>2, green>1.5).

Quantile-quantile plot showing observed and expected co-expression scores. Expected co-expression scores are derived from circular permuted subsets of regulatory regions (post-mapping permutations; black circles) or SNPs chosen by circular permutations against the background of all SNPs genotyped in each study.

Cell type	RRA p	FDR
Skeletal_Muscle_Cells	6.4e-10	0
K562_erythroblastic_leukemia_response_to_hemin_00hr45min	1.6e-07	0
COBLa_rinderpest_infection_06hr	7.2e-07	0
Fibroblast_skin_normal(cytoplasmic)	1.1e-06	0
K562_erythroblastic_leukemia_response_to_hemin_03hr00min	3.7e-06	0
COBLa_rinderpest_infection_24hr	4.3e-06	0
Hair_Follicle_Dermal_Papilla_Cells	1.5e-05	0
Preadipocyte_subcutaneous	3.5e-05	0
Schwann_Cells	3.9e-05	0
iPS_differentiation_to_neuron_downsyndrome_donor_C11CCL54_day00	4.1e-05	0
H1_embryonic_stem_cells_differentiation_to_CD34_HSC_day00	5.8e-05	0
Preadipocyte_visceral	6.4e-05	0
Mesenchymal_Stem_Cells_bone_marrow	7.7e-05	0
Skeletal_muscle_cells_differentiated_into_Myotubes_multinucleated	0.00014	0
iPS_differentiation_to_neuron_control_donor_C11CRL2429_day00	0.00015	0
Fibroblast_Cardiac	0.0002	0
Renal_Glomerular_Endothelial_Cells	0.00024	0
293SLAM_rinderpest_infection_00hr	0.00035	0
Osteoblast	0.00035	0
Skeletal_Muscle_Satellite_Cells	0.00061	0
Fibroblast_Dermal	0.00071	0
Hepatic_Stellate_Cells_(lipocyte)	0.00093	0
Smooth_Muscle_Cells_Bronchial	0.0078	0
Mammary_Epithelial_Cell	0.0089	0
Prostate_Stromal_Cells	0.018	0
Endothelial_Cells_Artery	0.022	0
Meningeal_Cells	0.035	0
Smooth_Muscle_Cells_Tracheal	0.038	0
Smooth_muscle_cells_airway_asthmatic	1.4e-05	0.00021
K562_erythroblastic_leukemia_response_to_hemin_12hr	0.00013	0.00021
Ciliary_Epithelial_Cells	0.0062	0.00021
Hep2_cells_treated_with_Streptococci_strain_5448	0.0072	0.00021
Renal_Epithelial_Cells	0.0079	0.00021
Smooth_Muscle_Cells_Umbilical_Artery	0.028	0.00021
mesenchymal_precursor_cell_adipose	0.028	0.00021
Fibroblast_Aortic_Adventitial	0.047	0.00021
Mesenchymal_Stem_Cells_adipose	5.7e-06	0.00037
K562_erythroblastic_leukemia_response_to_hemin_day04	2.5e-05	0.00037
Alveolar_Epithelial_Cells	0.0003	0.00037
COBLa_rinderpest_infection_12hr	0.0022	0.00037
Smooth_Muscle_Cells_Umbilical_Vein	0.0058	0.00037
K562_erythroblastic_leukemia_response_to_hemin_00hr00min	4.7e-07	0.00051
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction	0.00021	0.00051
COBLa_rinderpest_infection_00hr	0.00029	0.00051
lymph_endothelial_cells_VEGF_00hr15min	0.02	0.00051
Fibroblast_Gingival(periodontitis)	0.0082	0.00066
K562_erythroblastic_leukemia_response_to_hemin_day03	0.00019	0.00081
Corneal_Epithelial_Cells	0.0016	0.00086
Endothelial_Cells_Vein	0.0054	0.00086
aorticSMC_responsetoIL1b_immediate_early_00hr15min	0.0074	0.00086
Smooth_Muscle_Cells_Brachiocephalic	0.011	0.00086
Fibroblast_Periodontal_Ligament	0.013	0.00086
Saos2calc_00hr15min	0.04	0.00086
K562_erythroblastic_leukemia_response_to_hemin_06hr	2.5e-05	0.00095
COBLa_rinderpestC_infection_24hr	4.4e-05	0.00095
iPS_differentiation_to_neuron_control_donor_C32CRL1502_day00	0.00022	0.0012
Retinal_Pigment_Epithelial_Cells	0.018	0.0012
293SLAM_rinderpest_infection_12hr	0.0022	0.0013
K562_erythroblastic_leukemia_response_to_hemin_day02	9.9e-05	0.0013
mesenchymalstemcells(adiposederived)adipogenicinduction_00hr30min	0.00049	0.0013
Fibroblast_Aortic_Adventitial(cytoplasmic)	0.016	0.0013
mesenchymal_precursor_cell_cardiac	0.037	0.0013
293SLAM_rinderpest_infection_06hr	0.0035	0.0016
Tracheal_Epithelial_Cells	0.012	0.0017
iPS_differentiation_to_neuron_downsyndrome_donor_C18CCL54_day06	0.00011	0.0017
mesenchymal_precursor_cell_ovarian_cancer_right_ovary	0.0021	0.0019
293SLAM_rinderpest_infection_24hr	3.4e-05	0.002
K562_erythroblastic_leukemia_response_to_hemin_01hr00min	0.0019	0.0026
K562_erythroblastic_leukemia_response_to_hemin_00hr30min	0.00021	0.0027
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day08	0.0016	0.0027
K562_erythroblastic_leukemia_response_to_hemin_01hr40min	0.00078	0.0031
Placental_Epithelial_Cells	0.014	0.0031
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day05	0.0085	0.0031
iPS_differentiation_to_neuron_downsyndrome_donor_C18CCL54_day00	0.0088	0.0031
K562_erythroblastic_leukemia_response_to_hemin_03hr30min	0.0029	0.0032
COBLa_rinderpestC_infection_12hr	0.0084	0.0035
iPS_differentiation_to_neuron_downsyndrome_donor_C11CCL54_day18	0.015	0.0038
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day03	0.00033	0.0039
iPS_differentiation_to_neuron_control_donor_C11CRL2429_day18	0.038	0.0044
Mesenchymal_Stem_Cells_umbilical	0.022	0.0056
Bronchial_Epithelial_Cell	0.00017	0.0061
Myoblast_differentiation_to_myotubes_day00_Duchenne_Muscular_Dystrophy	0.00011	0.0069
K562_erythroblastic_leukemia_response_to_hemin_00hr15min	0.00087	0.0076
Fibroblast_Gingival	0.004	0.011
K562_erythroblastic_leukemia_response_to_hemin_04hr	0.0049	0.011
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day07	0.0051	0.011
K562_erythroblastic_leukemia_response_to_hemin_01hr20min	0.01	0.012
Hepatic_Sinusoidal_Endothelial_Cells	0.045	0.012
hIPS	0.0013	0.012
ARPE19_EMT_induced_with_TGFbeta_and_TNFalpha_24hr00min	4.7e-07	0.015
K562_erythroblastic_leukemia_response_to_hemin_02hr30min	0.016	0.017
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day04	0.024	0.018
ARPE19_EMT_induced_with_TGFbeta_and_TNFalpha_08hr00min	0.02	0.018
K562_erythroblastic_leukemia_response_to_hemin_02hr00min	0.031	0.019
ARPE19_EMT_induced_with_TGFbeta_and_TNFalpha_01hr40min	0.037	0.021
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day01	0.027	0.03
HES3GFP_Embryonic_Stem_cells_cardiomyocytic_induction_day06	0.044	0.034

Top promoter[SNPs in top promoter]		Corrected coexpression score	Bonferroni-corrected p-value	FDR
p3@RPL17 [rs3814888]		0.68	0	0.0
+ linkage disequilibrium:	rs3814888:rs7506517 D'=1.0; r²=0.57. enhancer@chr18:46946352-46946456 [rs7506517]	0.05	1	0.91
p1@CENPW [rs9388486]		0.67	0	0.0
p1@TCF19 [rs720468, rs3130456]		0.65	0	0.0
p1@RPL35P2 [rs6457769]		0.62	0	0.0
p1@PSMC3 [rs7948705]		0.6	0	0.0
+ linkage disequilibrium:	rs7948705:rs3740689 D'=1.0; r²=0.58. p@chr11:47380465..47380487,- [rs3740689]	0.02	1	0.98
p@chr1:184021069..184021077,+ [rs2274432]		0.58	0	0.0
p2@CPNE1, p2@RBM12 [rs6119636]		0.56	0	0.0
p@chr17:47039347..47039351,+ [rs2291725, rs2291726]		0.54	0	0.0
p1@NCAPG [rs11941723, rs2074974]		0.54	0	0.0
+ linkage disequilibrium:	rs2074974:rs4698210 D'=1.0; r²=0.62. enhancer@chr4:17827662-17827866 [rs4698210]	0.31	1	0.21
p2@RQCD1 [rs500422]		0.52	0	0.0
+ linkage disequilibrium:	rs500422:rs611203 D'=1.0; r²=0.98. p2@PLCD4 [rs611203]	0.12	1	0.76
p@chr6:31595842..31595910,- [rs1046080]		0.51	0	0.0
+ linkage disequilibrium:	rs1046080:rs3130054 D'=0.56; r²=0.19. p1@MCCD1 [rs3130054]	0.28	1	0.3
p4@HIST1H4A, p4@HIST1H4B, p4@HIST1H4D, p4@HIST1H4E, p4@HIST1H4F, p4@HIST1H4H, p4@HIST1H4I, p4@HIST1H4J, p4@HIST1H4K, p4@HIST1H4L, p4@HIST2H4A, p4@HIST2H4B, p4@HIST4H4, p5@HIST1H4C [rs2393593, rs3999544]		0.51	0	0.0
p@chr20:47679880..47679883,+ [rs6019621]		0.49	0	0.0
p1@JMJD4 [rs2295994]		0.49	0	0.0
p1@ZNFX1-AS1 [rs6648]		0.48	0	0.0
p1@EXOSC5 [rs10853751]		0.48	0	0.0
+ linkage disequilibrium:	same SNP, different promoter: chr19:41903221..41903222,+ [rs10853751]	0.07	1	0.85
p@chr2:242192880..242192896,- [rs7578199]		0.47	0	0.0
p12@ZBTB38 [rs1863868]		0.47	0	0.0
p@chr7:23507613..23507647,+ [rs4496867]		0.46	0	0.0
chr16:2257216..2257230,+ [rs26862]		0.45	0.08	0.0
p@chr9:95691523..95691530,- [rs13296126]		0.43	0.18	0.01
+ linkage disequilibrium:	rs13296126:rs13293147 D'=0.97; r²=0.6. enhancer@chr9:95727493-95728071 [rs13293147]	0.04	1	0.93
chr9:86593333..86593367,- [rs167203]		0.43	0.22	0.01
p@chr7:92244110..92244132,- [rs42039]		0.43	0.3	0.01
p@chr6:28926723..28926729,+ [rs6901599]		0.41	0.62	0.03
p@chr4:145568170..145568180,- [rs7689420]		0.41	0.73	0.03
enhancer@chr7:46431809-46432084 [rs12534091]		0.39	1	0.04
+ linkage disequilibrium:	rs12534091:rs13231201 D'=1.0; r²=0.85. p@chr7:46385081..46385087,+ [rs13231201, rs13233996] rs12534091:rs13233996 D'=1.0; r²=0.85. p@chr7:46385081..46385087,+ [rs13231201, rs13233996]	0.24	1	0.41
p1@ENST00000408001 [rs2764205]		0.39	1	0.04
+ linkage disequilibrium:	rs2764205:rs3800457 D'=1.0; r²=0.96. enhancer@chr6:34663389-34663600 [rs3800457]	0.16	1	0.62
p@chr17:59485435..59485452,+ [rs2240736]		0.39	1	0.05
chr11:75277935..75277984,+ [rs651581]		0.39	1	0.05
enhancer@chr2:241860652-241861096 [rs10207380]		0.37	1	0.06
+ linkage disequilibrium:	rs10207380:rs7591322 D'=1.0; r²=0.9. enhancer@chr2:241899989-241900661 [rs7591322]	0.06	1	0.88
enhancer@chr15:74226590-74227025 [rs2028386, rs4337252]		0.37	1	0.07
p1@ENST00000438379 [rs1182175]		0.37	1	0.07
p3@SLC38A9 [rs6450345]		0.36	1	0.08
+ linkage disequilibrium:	rs6450345:rs2408204 D'=1.0; r²=0.91. p4@SLC38A9 [rs2408204]	0.27	1	0.31
p2@MFAP2 [rs9435732]		0.35	1	0.09
+ linkage disequilibrium:	rs9435732:rs732679 D'=0.64; r²=0.26. chr1:17371735..17371757,- [rs732679, rs10887994] rs9435732:rs10887994 D'=0.95; r²=0.35. chr1:17371735..17371757,- [rs732679, rs10887994]	0.13	1	0.72
p@chr13:92001646..92001654,+ [rs4284505]		0.35	1	0.09
p1@ENST00000544890 [rs6633]		0.35	1	0.1
+ linkage disequilibrium:	rs6633:rs12817892 D'=1.0; r²=1.0. p1@ENST00000545406 [rs12817892]	0.09	1	0.83
enhancer@chr13:51103280-51103738 [rs536338]		0.35	1	0.1
chr6:81442621..81442640,+ [rs11756729]		0.34	1	0.12
p@chr15:84408895..84408904,+ [rs1426160]		0.34	1	0.12
chr6:32148013..32148032,+ [rs3134943]		0.33	1	0.15
chr6:31237739..31237758,+ [rs9264606, rs9264608]		0.33	1	0.18
p@chr5:33229308..33229311,- [rs7443939]		0.32	1	0.19
p3@PMPCA [rs3812584]		0.32	1	0.19
+ linkage disequilibrium:	same SNP, different promoter: p4@PMPCA [rs3812584]	0.08	1	0.84
enhancer@chr20:34471781-34472424 [rs3787173]		0.31	1	0.21
+ linkage disequilibrium:	rs3787173:rs11699815 D'=1.0; r²=1.0. p7@SCAND1 [rs11699815]	0.11	1	0.8
p6@ACSS2 [rs3818273]		0.31	1	0.21
+ linkage disequilibrium:	rs3818273:rs6120778 D'=1.0; r²=0.75. p9@MYH7B [rs6120778]	0.0	1	1.0
p@chr5:134364600..134364638,- [rs479632]		0.31	1	0.21
p@chr5:32829061..32829092,+ [rs7733331]		0.31	1	0.23
enhancer@chr19:2182828-2183132 [rs12609327]		0.3	1	0.24
enhancer@chr10:80918312-80918688 [rs779932, rs779933]		0.3	1	0.24
p3@ANP32E [rs6679147]		0.3	1	0.26
p4@EHMT2 [rs7887]		0.29	1	0.27
+ linkage disequilibrium:	rs7887:rs2072633 D'=0.74; r²=0.19. p37@CFB [rs2072633]	0.1	1	0.8
p5@NARFL [rs12597563]		0.29	1	0.27
p5@ITCH [rs6579167]		0.29	1	0.27
p@chr5:131541116..131541121,- [rs10075459]		0.29	1	0.27
enhancer@chr6:7692548-7692711 [rs7756651]		0.29	1	0.28
p@chr6:7786714..7786717,+ [rs5009024]		0.28	1	0.28
p@chr20:33734472..33734476,- [rs1415771]		0.28	1	0.3
enhancer@chr3:136492102-136492187 [rs9819856]		0.28	1	0.3
p3@TNPO1 [rs34651]		0.28	1	0.3
enhancer@chr11:12697923-12698543 [rs7926971]		0.28	1	0.3
p@chr10:81113959..81113978,+ [rs7332]		0.27	1	0.31
enhancer@chr15:99214674-99215061 [rs2311767]		0.27	1	0.32
enhancer@chr3:13555627-13555924 [rs2597513, rs2655226]		0.27	1	0.32
p@chr12:123616405..123616412,- [rs1727294]		0.27	1	0.32
p10@SCUBE3 [rs2071920]		0.26	1	0.33
+ linkage disequilibrium:	rs2071920:rs6899744 D'=1.0; r²=0.05. p@chr6:35286250..35286262,+ [rs6899744]	0.24	1	0.41
enhancer@chr5:54886412-54886788 [rs1983189]		0.26	1	0.35
+ linkage disequilibrium:	rs1983189:rs3936310 D'=0.89; r²=0.64. enhancer@chr5:54896440-54896979 [rs3936310]	0.13	1	0.72
p5@NOS3 [rs743507]		0.26	1	0.35
p@chr17:30326770..30326783,+ [rs537166]		0.25	1	0.36
enhancer@chr5:32768263-32768639 [rs3792752]		0.25	1	0.36
enhancer@chr1:23448967-23449247 [rs1571466]		0.25	1	0.37
+ linkage disequilibrium:	rs1571466:rs2806561 D'=1.0; r²=1.0. p3@LUZP1 [rs2806561]	0.13	1	0.73
p@chr6:32575596..32575598,- [rs9461776]		0.24	1	0.39
enhancer@chr9:95288173-95288480 [rs4744137]		0.24	1	0.39
p@chr19:7184803..7184814,- [rs891088]		0.24	1	0.41
p@chr6:142702634..142702638,+ [rs7757571]		0.24	1	0.41
p@chr1:172134755..172134764,+ [rs537444]		0.23	1	0.42
+ linkage disequilibrium:	same SNP, different promoter: p@chr1:172134736..172134739,+ [rs537444]	0.1	1	0.8
p@chr12:56727954..56727978,+ [rs2371494]		0.23	1	0.42
enhancer@chr8:135628946-135629314 [rs7010948, rs7011157]		0.23	1	0.44
+ linkage disequilibrium:	rs7010948:rs894344 D'=0.89; r²=0.59. p@chr8:135612764..135612786,- [rs894344] rs7011157:rs894344 D'=0.89; r²=0.59. p@chr8:135612764..135612786,- [rs894344]	0.18	1	0.56
p1@C20orf173 [rs6060450]		0.23	1	0.44
p13@TGFB2 [rs991967]		0.22	1	0.46
p@chr20:33356385..33356390,- [rs2295353]		0.22	1	0.47
p@chr13:33232408..33232414,+ [rs2301393, rs7335546]		0.21	1	0.48
p@chr12:93967885..93967910,+ [rs3782415]		0.21	1	0.49
enhancer@chr5:131406243-131406684 [rs721121]		0.21	1	0.49
p@chr19:3434311..3434347,+ [rs2074977]		0.21	1	0.49
enhancer@chr1:77980165-77980378 [rs12729914]		0.21	1	0.49
enhancer@chr2:25457688-25458068 [rs11695471]		0.21	1	0.49
+ linkage disequilibrium:	rs11695471:rs7594432 D'=1.0; r²=0.35. enhancer@chr2:25482494-25482888 [rs7594432]	0.17	1	0.6
p13@ESR1 [rs2077647]		0.2	1	0.5
enhancer@chr7:2749963-2750288 [rs7798875]		0.2	1	0.5
enhancer@chr6:131327805-131328036 [rs6921207]		0.2	1	0.5
p@chr3:171965372..171965436,+ [rs1039027]		0.2	1	0.52
enhancer@chr12:94178297-94178734 [rs10859579]		0.19	1	0.53
p@chr12:11898277..11898290,+ [rs1009954]		0.19	1	0.54
p10@FAM134A [rs3210652]		0.19	1	0.54
enhancer@chr14:68699331-68699744 [rs1314913]		0.19	1	0.56
p@chr18:46582506..46582523,+ [rs16950294, rs16950298, rs16950303]		0.18	1	0.59
enhancer@chr20:6594261-6594618 [rs6038557, rs6054392]		0.18	1	0.59
enhancer@chr2:88899554-88899981 [rs1913671]		0.17	1	0.59
p@chr6:26500524..26500540,+ [rs13194984]		0.17	1	0.6
enhancer@chr17:61639369-61639739 [rs9906747]		0.17	1	0.61
p2@SLFNL1 [rs17357954]		0.17	1	0.61
p@chr6:35765153..35765158,+ [rs2766597]		0.17	1	0.61
p@chr6:32412808..32412821,- [rs3135388]		0.16	1	0.61
p@chr15:84295121..84295125,+ [rs2585070]		0.16	1	0.62
enhancer@chr13:51210187-51210463 [rs7991818]		0.16	1	0.62
p4@SLC3A1 [rs3738985]		0.16	1	0.63
enhancer@chr2:233181304-233181393 [rs6743962]		0.16	1	0.63
enhancer@chr20:47471567-47471956 [rs6012541, rs6095329]		0.15	1	0.65
+ linkage disequilibrium:	rs6012541:rs752421 D'=0.98; r²=0.95. enhancer@chr20:47434951-47435381 [rs752421] rs6095329:rs752421 D'=0.98; r²=0.95. enhancer@chr20:47434951-47435381 [rs752421]	0.07	1	0.85
enhancer@chr11:65248969-65249218 [rs1787666]		0.15	1	0.66
p@chr7:20392799..20392811,+ [rs2214442]		0.13	1	0.72
p@chr9:98245687..98245692,- [rs17369383]		0.13	1	0.73
enhancer@chr15:70047760-70048370 [rs10152590, rs10152591]		0.12	1	0.76
enhancer@chr2:25136821-25136958 [rs10203386]		0.12	1	0.77
+ linkage disequilibrium:	rs10203386:rs9631062 D'=0.96; r²=0.52. p@chr2:25110228..25110248,+ [rs9631062]	0.09	1	0.81
p@chr1:184128142..184128173,+ [rs6424925]		0.11	1	0.77
chr5:168233584..168233600,- [rs17553840]		0.1	1	0.8
+ linkage disequilibrium:	rs17553840:rs17635284 D'=1.0; r²=1.0. p@chr5:168246378..168246386,+ [rs17635284]	0.02	1	0.98
p9@ITIH4 [rs13072536]		0.1	1	0.8
p1@C2CD4A [rs8039105]		0.1	1	0.8
p@chr6:76415669..76415672,+ [rs9343320]		0.1	1	0.8
p4@MICAL1 [rs2277113]		0.1	1	0.81
+ linkage disequilibrium:	rs2277113:rs9398202 D'=1.0; r²=0.88. enhancer@chr6:109780095-109780443 [rs9398202]	0.07	1	0.85
enhancer@chr3:135861520-135861675 [rs9881400]		0.09	1	0.84
p@chr1:149875845..149875874,- [rs7534365]		0.08	1	0.84
enhancer@chr11:48102794-48103200 [rs6485807]		0.08	1	0.84
p8@PRKG2 [rs788861]		0.08	1	0.84
p@chr5:131675781..131675785,+ [rs272872]		0.08	1	0.84
p@chr6:6884633..6884678,- [rs4960263]		0.08	1	0.84
enhancer@chr20:34689096-34689267 [rs2746102]		0.07	1	0.86
p@chr3:11643506..11643527,- [rs2276749]		0.06	1	0.87
p@chr2:219610047..219610074,- [rs2272189]		0.06	1	0.88
p@chr5:179737830..179737831,- [rs888926]		0.05	1	0.91
enhancer@chr6:34358644-34359014 [rs3798564]		0.05	1	0.91
p2@ENST00000473753 [rs11049416]		0.05	1	0.91
enhancer@chr7:28122864-28123088 [rs10951191]		0.04	1	0.93
p6@CCDC91 [rs10843172]		0.04	1	0.93
p@chr9:139118938..139118947,- [rs10858250]		0.04	1	0.93
p3@HCG22 [rs4713429, rs9262615]		0.04	1	0.93
+ linkage disequilibrium:	rs4713429:rs7744253 D'=0.94; r²=0.86. p@chr6:31023284..31023287,- [rs7744253] rs9262615:rs7744253 D'=0.92; r²=0.84. p@chr6:31023284..31023287,- [rs7744253]	0.03	1	0.96
chr17:21279520..21279522,+ [rs7213608]		0.02	1	0.97
p2@SOCS5 [rs3829835]		0.01	1	0.99
p@chr20:34820071..34820089,+ [rs3813918]		0.01	1	0.99
p@chr15:100749314..100749319,- [rs5026360]		0.0	1	1.0

JOB ID = GIANT_HEIGHT_LangoAllen2010_publicrelease_HapMapCeuFreq_db138thresh5e-06_complete_BACKCIRC_pj0.1_f5ep

Link threshold (-log10 p):

Link threshold (-log₁₀ p):